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Dr Ebenezer Foster-Nyarko

Research Fellow

United Kingdom

I am a Research Fellow in Professor Kathryn Holt's group at the London School of Hygiene and Tropical Medicine, UK. My current research involves undertaking high-quality computational genomics-based research to elucidate the genetic determinants of AMR and virulence in Klebsiella pneumonia and contributing to research aimed at improving phenotype prediction from genotypic data to enhance genomic surveillance of AMR and virulence in K. pneumoniae. I have a PhD in microbial genomics (Quadram Institute Bioscience and Norwich Medical School, University of East Anglia, Norwich, UK). My PhD research focused on understanding the within-host diversity of Escherichia coli in the vertebrate gut.

Before my PhD, I worked as a Scientific Officer at the Medical Research Council Unit the Gambia at LSHTM, where I was involved in invasive bacterial disease surveillance in the WHO Regional Co-ordinating Centre headed by Professor Martin Antonio.

Aside from my research, I am honoured to serve as the Regional Coordinator for PulseNET Africa, a regional hub of PulseNET International. I also chair the African Pathogen Initiative's Foodborne Diseases Technical Focus Group, helping to shape the future of foodborne disease genomic surveillance in Africa.

Affiliations

Department of Infection Biology
Faculty of Infectious and Tropical Diseases

Research

Microbial genomics, Antimicrobial resistance, Bioinformatics, Klebsiella pneumoniae
Research Area
Bacteria
Drug resistance
Surveillance
Bacteriology
Genomics
Microbiology

Selected Publications

Kanzi, AM; Smith, SI; Msefula, C; Mwaba, J; Ajayi, A; Kwenda, G; Tanui, CK; Smith, AM; Bester, LA; Derra, FA; Yamba, K; Banda, DL; Kalule, JB; Kumburu, HH; Fakim, YJ; Sithole, N; Njage, PM K; Chikuse, FF; Ondoa, P; Tessema, SK; Foster-Nyarko, E;
2025
eBioMedicine
FOSTER-NYARKO, E; Able-Thomas, S; Adade, NE; Adade, R; Anne, JC B; Antwi, L; Bah, Y; Boateng, G; Carleton, H; Chaima, D; Chilengi, R; Coulibaly, KJ; Derra, FA; Didon, D; Dimuna, C; Dosso, M; Drammeh, MM; Ferjani, S; Holt, KE; Jatta, R; Kalule, JB; Kanteh, A; Kette, HF; Khan, D; Kouadio, NK N; ... Vubil, D.
2024
Cold Spring Harbor Laboratory
Kalule, JB; Bester, LA; Banda, DL; Derra, FA; Msefula, C; Smith, AM; Ajayi, A; Kumburu, H; Kwenda, G; Yamba, K; Mwaba, J; Fakim, YJ; Sithole, N; Kanzi, AM; Njage, PM K; Chikuse, F; Tessema, SK; Smith, SI; FOSTER-NYARKO, E;
2024
Journal of epidemiology and global health
Belman, S; Lefrancq, N; Nzenze, S; Downs, S; Du Plessis, M; Lo, SW; Global Pneumococcal Sequencing Consortium,; McGee, L; Madhi, SA; Von Gottberg, A; Bentley, SD; Salje, H;
2024
Nature
Sauerborn, E; Corredor, NC; Reska, T; Perlas, A; Vargas da Fonseca Atum, S; Goldman, N; Wantia, N; Prazeres da Costa, C; FOSTER-NYARKO, E; Urban, L;
2024
Nature communications
Mills, RO; Dadzie, I; Le-Viet, T; Baker, DJ; Addy, HP K; Akwetey, SA; Donkoh, IE; Quansah, E; Semanshia, PS; Morgan, J; Mensah, A; Adade, NE; Ampah, EO; Owusu, E; Mwintige, P; Amoako, EO; SPADAR, A; HOLT, KE; FOSTER-NYARKO, E;
2024
The Journal of antimicrobial chemotherapy
Kalule, JB; Bester, LA; Banda, DL; Derra, FA; Chikuse, F; Tessema, SK; FOSTER-NYARKO, E;
2023
Cold Spring Harbor Laboratory
FOSTER-NYARKO, E; Cottingham, H; Wick, RR; Judd, LM; Lam, MM C; Wyres, KL; Stanton, TD; Tsang, KK; David, S; Aanensen, DM; Brisse, S; HOLT, KE;
2023
Microbial genomics
Miles, SL; Torraca, V; DYSON, ZA; L贸pez-Jim茅nez, AT; FOSTER-NYARKO, E; Lobato-M谩rquez, D; Jenkins, C; HOLT, KE; MOSTOWY, S;
2023
mBio
FOSTER-NYARKO, E; HOLT, KE; Cottingham, H; Wick, R; Judd, LM; Lam, M; Wyres, KL; Stanton, T; Tsang, KK; David, S; Bridel, S; Palma, F; Aanensen, DM; Brisse, S;
2023
Figshare